PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_A05C1BF04.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 202aa    MW: 22071.5 Da    PI: 6.6963
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_A05C1BF04.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB138.12.4e-431811797
                  NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                           m++vlP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvepl++yl+++re+ege 
  Traes_6DL_A05C1BF04.1  1 MRRVLPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLSIYLHRFREFEGEA 81
                           89****************************************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.7E-19155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.0E-39191IPR009072Histone-fold
SuperFamilySSF471138.87E-31193IPR009072Histone-fold
PRINTSPR006151.2E-161937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-163856No hitNo description
PRINTSPR006151.2E-165775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MRRVLPPHAK ISDDAKETIQ ECVSEYISFI TGEANERCQR EQRKTITAED VLWAMSRLGF  60
DDYVEPLSIY LHRFREFEGE ARGAGAGHHH HGMPPMMLKP RGAPGPMVPH GDMQMHAAGM  120
YGGGAMPPHP HHPFHMPPHH GQYPQYEMYG GEHGMAAYYG GPYAPGNGGN NGDGSGSSGN  180
GHGGDSTPPA GNFEHHQTFG YK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B3e-321761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-321761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7269060.0KT726906.1 Hordeum vulgare cultivar Hua30 nuclear factor Y B subunit (HIPP1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624920.12e-80PREDICTED: nuclear transcription factor Y subunit B-10
TrEMBLW5GYD21e-147W5GYD2_WHEAT; Uncharacterized protein
STRINGMLOC_36682.11e-99(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.24e-44nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]